Foundations of Data Science

These lessons will help you get your feet in data science and give you tools to help you slice and dice your data into results.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Material

Bash

These lessons focus on using the Command Line Interface (CLI) and Bash for processing data.

Lesson Slides Hands-on Recordings
Advanced CLI in Galaxy
CLI basics
CLI Educational Game - Bashcrawl

Python

These lessons focus on coding in Python

Lesson Slides Hands-on Recordings
Introduction to Python
Advanced Python
Plotting in Python

Python (Modular)

These lessons cover coding in Python except they attempt to be very modular, having few interdependencies, allowing you to re-arrange or insert them in your existing course curriculum as needed.

Lesson Slides Hands-on Recordings
Python - Math
Python - Functions
Python - Basic Types & Type Conversion
Python - Lists & Strings & Dictionaries
Python - Flow Control
Python - Loops
Python - Files & CSV
Python - Try & Except
Python - Introductory Graduation
Python - Argparse
Python - Globbing
Python - Subprocess

R

These lessons focus on coding in R

Lesson Slides Hands-on Recordings
R basics in Galaxy
    • Advanced R in Galaxy
    R
    • dplyr & tidyverse for data processing

    SQL

    Here you'll learn to use SQL to query databases and extract meaningful results from them.

    Lesson Slides Hands-on Recordings
    Advanced SQL
    Introduction to SQL
    SQL Educational Game - Murder Mystery
    SQL with Python
    SQL with R

    Scientific Workflow Management Systems

    Here you can find brief tutorials on a couple different workflow engines that you might encounter in the wild.

    Lesson Slides Hands-on Recordings
    Make & Snakemake

    Other


    Assorted other tutorials

    Lesson Slides Hands-on Recordings
    Variant Calling Workflow
    Version Control with Git

    Frequently Asked Questions

    Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

    Maintainers

    This material is maintained by:

    orcid logoAvatarHelena Rasche orcid logoAvatarSaskia Hiltemann orcid logoAvatarFotis E. Psomopoulos orcid logoAvatarBérénice Batut orcid logoAvatarYvan Le Bras

    For any question related to this topic and the content, you can contact them or visit our Gitter channel.

    Contributors

    This material was contributed to by:

    AvatarThe Carpentries orcid logoAvatarHelena Rasche AvatarBazante Sanders AvatarErasmus+ Programme AvatarAvans Hogeschool AvatarDonny Vrins AvatarNU Knight Lab orcid logoAvatarSofoklis Keisaris orcid logoAvatarFotis E. Psomopoulos orcid logoAvatarSaskia Hiltemann AvatarMaria Christina Maniou orcid logoAvatarBérénice Batut orcid logoAvatarToby Hodges